dgx-spark-playbooks/nvidia/monai-reasoning/README.md

MONAI-Reasoning-CXR-3B Model

Work with a MONAI vision-language model through Open WebUI

Table of Contents

• Overview
• Instructions

---

Overview

Basic idea

The MONAI Reasoning CXR 3B model is a medical AI model designed for chest X-ray (CXR) interpretation with reasoning capabilities. It combines imaging analysis with large-scale language modeling:

• Medical focus: Built within the MONAI framework for healthcare imaging tasks.
• Vision + language: Takes CXR images as input and produces diagnostic text or reasoning outputs.
• Reasoning layer: Goes beyond simple classification to explain intermediate steps (e.g., opacity → pneumonia suspicion).
• 3B scale: A moderately large multimodal model (~3 billion parameters).
• Trust and explainability: Aims to make results more interpretable and clinically useful.

What you'll accomplish

You'll deploy the MONAI-Reasoning-CXR-3B model, a specialized vision-language model for chest X-ray analysis, on an NVIDIA Spark device with Blackwell GPU architecture. By the end of this walkthrough, you will have a complete system running with VLLM serving the model for high-performance inference and Open WebUI providing an easy-to-use interface for interacting with the model. This setup is ideal for clinical demonstrations and research that requires transparent AI reasoning.

What to know before starting

• Experience with the Linux command line and shell scripting
• A basic understanding of Docker, including running containers and managing images
• Familiarity with Python and using pip for package management
• Knowledge of Large Language Models (LLMs) and how to interact with API endpoints
• Basic understanding of NVIDIA GPU hardware and CUDA drivers

Prerequisites

Hardware Requirements:

• NVIDIA Spark device with ARM64 (AArch64) architecture
• NVIDIA Blackwell GPU architecture
• At least 24GB of GPU VRAM

Software Requirements:

• NVIDIA Driver: Ensure the driver is installed and the GPU is recognized

nvidia-smi

• Docker Engine: Docker must be installed and the daemon running

docker --version

• NVIDIA Container Toolkit: Required for GPU access in containers

docker run --rm --gpus all nvidia/cuda:11.0-base nvidia-smi

• Hugging Face CLI: You'll need this to download the model

pip install -U huggingface_hub  
huggingface-cli whoami

• System Architecture: Verify your system architecture for proper container selection

uname -m
## Should output: aarch64 for ARM64 systems like NVIDIA Spark

Time & risk

• Estimated time: 20-35 minutes (not including model download)
• Risk level: Low. All steps use publicly available containers and models
• Rollback: The entire deployment is containerized. To roll back, you can simply stop and remove the Docker containers

Instructions

Step 1. Create the Project Directory

First, create a dedicated directory to store your model weights and configuration files. This keeps the project organized and provides a clean workspace.

## Create the main directory
mkdir -p ~/monai-reasoning-spark
cd ~/monai-reasoning-spark

## Create a subdirectory for the model
mkdir -p models

Step 2. Download the MONAI-Reasoning-CXR-3B Model

Use the Hugging Face CLI to download the model weights into the directory you just created. The model is approximately 6GB and will take several minutes to download depending on your internet connection.

huggingface-cli download monai/monai-reasoning-cxr-3b \
--local-dir ./models/monai-reasoning-cxr-3b \
--local-dir-use-symlinks False

Verification Step:

ls -la ./models/monai-reasoning-cxr-3b
## You should see model files including config.json and model weights

Important Note: Currently, a custom internal VLLM container is required until the sm121 support is available in the public image. The instructions below use the internal container ******:5005/dl/dgx/vllm:main-py3.31165712-devel.

Step 3. Verify System Architecture

Before proceeding, confirm your system architecture is ARM64 for proper container selection on your NVIDIA Spark device:

## Check your system architecture
uname -m
## Should output: aarch64 for ARM64 systems like NVIDIA Spark

Step 4. Create a Docker Network

Create a dedicated Docker bridge network to allow the VLLM and Open WebUI containers to communicate with each other easily and reliably.

docker network create monai-net

Step 5. Deploy the VLLM Server

Launch the VLLM container with ARM64 architecture support, attaching it to the network you created and mounting your local model directory. This step configures the server for optimal performance on NVIDIA Spark hardware.

## Stop and remove existing container if running
docker stop vllm-server 2>/dev/null || true
docker rm vllm-server 2>/dev/null || true

## Run the VLLM server with internal container
docker run --rm -d \
--name vllm-server \
--gpus all \
--ipc=host \
--ulimit memlock=-1 \
--ulimit stack=67108864 \
--network monai-net \
--platform linux/arm64 \
-v ./models/monai-reasoning-cxr-3b:/model \
-p 8000:8000 \
******:5005/dl/dgx/vllm:main-py3.31165712-devel \
vllm serve /model \
--host 0.0.0.0 \
--port 8000 \
--dtype bfloat16 \
--trust-remote-code \
--gpu-memory-utilization 0.5 \
--enforce-eager \
--served-model-name monai-reasoning-cxr-3b

Wait for startup and verify:

## Wait for the model to load (can take 1-2 minutes on Spark hardware)
sleep 90

## Check if container is running
docker ps

## Test the VLLM API
curl http://localhost:8000/v1/models

You should see JSON output showing the model is loaded and available.

Step 6. Deploy Open WebUI

Launch the Open WebUI container with ARM64 architecture support for your NVIDIA Spark device.

## Define custom prompt suggestions for medical X-ray analysis
PROMPT_SUGGESTIONS='[
{
    "title": ["Analyze X-Ray Image", "Find abnormalities and support devices"],
    "content": "Find abnormalities and support devices in the image."
}
]'

## Stop and remove existing container if running
docker stop open-webui 2>/dev/null || true
docker rm open-webui 2>/dev/null || true
sleep 5

## Run Open WebUI with custom configuration
docker run -d --rm \
--name open-webui \
--network monai-net \
--platform linux/arm64 \
-p 3000:8080 \
-e WEBUI_AUTH=0 \
-e WEBUI_NAME=monai-reasoning \
-e ENABLE_SIGNUP=0 \
-e ENABLE_ADMIN_CHAT_ACCESS=0 \
-e ENABLE_VERSION_UPDATE_CHECK=0 \
-e OPENAI_API_BASE_URL="http://vllm-server:8000/v1" \
-e DEFAULT_PROMPT_SUGGESTIONS="$PROMPT_SUGGESTIONS" \
ghcr.io/open-webui/open-webui:main

Verify deployment:

## Wait for startup
sleep 15

## Check both containers are running
docker ps

## Test Open WebUI accessibility
curl -f http://localhost:3000 || echo "Still starting up"

Step 7. Validate the Complete Deployment

Check that both containers are running properly and all endpoints are accessible:

## Check container status
docker ps
## You should see both vllm-server and open-webui containers running

## Test the VLLM API
curl http://localhost:8000/v1/models
## Should return JSON with model information

## Test Open WebUI accessibility
curl -f http://localhost:3000
## Should return HTTP 200 response

Step 8. Configure Open WebUI

Configure the front-end interface to connect to your VLLM backend:

1. Open your web browser and navigate to http://<YOUR_SPARK_DEVICE_IP>:3000
2. Since authentication is disabled, you'll have direct access to the interface
3. The OpenAI API connection is pre-configured through environment variables
4. Go to the main chat screen, click "Select a model", and choose monai-reasoning-cxr-3b
5. Important: Navigate to Chat Controls → Advanced Params and disable "Reasoning Tags" to get the full reasoning output from the model

You can now upload a chest X-ray image and ask questions directly in the chat interface. The custom prompt suggestion "Find abnormalities and support devices in the image" will be available for quick access.

Step 10. Troubleshooting

Symptom	Cause	Fix
VLLM container fails to start	Insufficient GPU memory	Reduce --gpu-memory-utilization to 0.25
Model download fails	Network connectivity or HF auth	Check huggingface-cli whoami and internet
Open WebUI shows connection error	Wrong backend URL	Verify OPENAI_API_BASE_URL is set correctly
Model doesn't show full reasoning	Reasoning tags enabled	Disable "Reasoning Tags" in Chat Controls → Advanced Params

Step 11. Cleanup and Rollback

To stop and remove the containers and network, run the following commands. This will not delete your downloaded model weights.

Warning: This will stop all running containers and remove the network.

## Stop containers
docker stop vllm-server open-webui

## Remove network
docker network rm monai-net

## Optional: Remove model directory to free disk space
## rm -rf ~/monai-reasoning-spark/models

Step 12. Next Steps

Your MONAI reasoning system is now ready for use. Upload chest X-ray images through the web interface at http://<YOUR_SPARK_DEVICE_IP>:3000 and interact with the MONAI-Reasoning-CXR-3B model for medical image analysis and reasoning tasks.