dgx-spark-playbooks/nvidia/jax/README.md

# Optimized Jax

> Develop with Optimized Jax

## Table of Contents

- [Overview](#overview)
- [Instructions](#instructions)

---

## Overview

## Basic idea

JAX lets you write **NumPy-style Python code** and run it fast on GPUs without writing CUDA. It does this by:

- **NumPy on accelerators**: Use `jax.numpy` just like NumPy, but arrays live on the GPU.  
- **Function transformations**:  
  - `jit` → Compiles your function into fast GPU code.  
  - `grad` → Gives you automatic differentiation.  
  - `vmap` → Vectorizes your function across batches.  
  - `pmap` → Runs across multiple GPUs in parallel.  
- **XLA backend**: JAX hands your code to XLA (Accelerated Linear Algebra compiler), which fuses operations and generates optimized GPU kernels.

## What you'll accomplish

You'll set up a JAX development environment on NVIDIA Spark with Blackwell architecture that enables 
high-performance machine learning prototyping using familiar NumPy-like abstractions, complete with 
GPU acceleration and performance optimization capabilities.

## What to know before starting

- Comfortable with Python and NumPy programming
- General understanding of machine learning workflows and techniques
- Experience working in a terminal
- Experience using and building containers
- Familiarity with different versions of CUDA
- Basic understanding of linear algebra (high-school level math sufficient)

## Prerequisites

[ ] NVIDIA Spark device with Blackwell architecture
[ ] ARM64 (AArch64) processor architecture
[ ] Docker or container runtime installed
[ ] NVIDIA Container Toolkit configured
[ ] Verify GPU access: `nvidia-smi`
[ ] Verify Docker GPU support: `docker run --gpus all --rm nvcr.io/nvidia/cuda:13.0.1-runtime-ubuntu24.04 nvidia-smi`
[ ] Port 8080 available for marimo notebook access

## Ancillary files

All required assets can be found [here on GitHub](https://gitlab.com/nvidia/dgx-spark/temp-external-playbook-assets/dgx-spark-playbook-assets/-/blob/main)

- [**JAX introduction notebook**](https://gitlab.com/nvidia/dgx-spark/temp-external-playbook-assets/dgx-spark-playbook-assets/-/blob/main/${MODEL}/assets/jax-intro.py) — covers JAX programming model differences from NumPy and performance evaluation
- [**NumPy SOM implementation**](https://gitlab.com/nvidia/dgx-spark/temp-external-playbook-assets/dgx-spark-playbook-assets/-/blob/main/${MODEL}/assets/numpy-som.py) — reference implementation of self-organized map training algorithm in NumPy  
- [**JAX SOM implementations**](https://gitlab.com/nvidia/dgx-spark/temp-external-playbook-assets/dgx-spark-playbook-assets/-/blob/main/${MODEL}/assets/som-jax.py) — multiple iteratively refined implementations of SOM algorithm in JAX
- [**Environment configuration**](https://gitlab.com/nvidia/dgx-spark/temp-external-playbook-assets/dgx-spark-playbook-assets/-/blob/main/${MODEL}/assets/Dockerfile) — package dependencies and container setup specifications
- [**Course guide notebook**]() — overall material navigation and learning path

## Time & risk

**Duration:** 2-3 hours including setup, tutorial completion, and validation

**Risks:** 
- Package dependency conflicts in Python environment
- Performance validation may require architecture-specific optimizations

**Rollback:** Container environments provide isolation; remove containers and restart to reset state.

## Instructions

## Step 1. Verify system prerequisites

Confirm your NVIDIA Spark system meets the requirements and has GPU access configured.

```bash
## Verify GPU access
nvidia-smi

## Verify ARM64 architecture  
uname -m

## Check Docker GPU support
docker run --gpus all --rm nvcr.io/nvidia/cuda:13.0.1-runtime-ubuntu24.04 nvidia-smi
```

If the `docker` command fails with a permission error, you can either

1. run it with `sudo`, e.g., `sudo docker run --gpus all --rm nvcr.io/nvidia/cuda:13.0.1-runtime-ubuntu24.04 nvidia-smi`, or
2. add yourself to the `docker` group so you can use `docker` without `sudo`.

To add yourself to the `docker` group, first run `sudo usermod -aG docker $USER`.  Then, as your user account, either run `newgrp docker` or log out and log back in.

## Step 3. Clone the playbook repository

```bash
git clone https://gitlab.com/nvidia/dgx-spark/temp-external-playbook-assets/dgx-spark-playbook-assets/-/blob/main
```

## Step 3. Build the Docker image


> **Warning:** This command will download a base image and build a container locally to support this environment

```bash
cd jax/assets
docker build -t jax-on-spark .
```

## Step 4. Launch Docker container

Run the JAX development environment in a Docker container with GPU support and port forwarding for marimo access.

```bash
docker run --gpus all --rm -it \
    --shm-size=1g --ulimit memlock=-1 --ulimit stack=67108864 \
    -p 8080:8080 \
    jax-on-spark
```

## Step 5. Access marimo interface

Connect to the marimo notebook server to begin the JAX tutorial.

```bash
## Access via web browser
## Navigate to: http://localhost:8080
```

The interface will load a table-of-contents display and brief introduction to marimo.

## Step 6. Complete JAX introduction tutorial

Work through the introductory material to understand JAX programming model differences from NumPy.

Navigate to and complete the JAX introduction notebook, which covers:
- JAX programming model fundamentals
- Key differences from NumPy
- Performance evaluation techniques

## Step 7. Implement NumPy baseline

Complete the NumPy-based self-organized map (SOM) implementation to establish a performance 
baseline.

Work through the NumPy SOM notebook to:
- Understand the SOM training algorithm
- Implement the algorithm using familiar NumPy operations
- Record performance metrics for comparison

## Step 8. Optimize with JAX implementations

Progress through the iteratively refined JAX implementations to see performance improvements.

Complete the JAX SOM notebook sections:
- Basic JAX port of NumPy implementation
- Performance-optimized JAX version
- GPU-accelerated parallel JAX implementation
- Compare performance across all versions

## Step 9. Validate performance gains

The notebooks will show you how to check the performance of each SOM training implementation; you'll see that that JAX implementations show performance improvements over NumPy baseline (and some will be quite a lot faster).

Visually inspect the SOM training output on random color data to confirm algorithm correctness.

## Step 10. Validate installation

Confirm all components are working correctly and notebooks execute successfully.

```bash
## Test GPU JAX functionality
python -c "import jax; print(jax.devices()); print(jax.device_count())"

## Verify JAX can access GPU
python -c "import jax.numpy as jnp; x = jnp.array([1, 2, 3]); print(x.device())"
```

Expected output should show GPU devices detected and JAX arrays placed on GPU.

## Step 11. Troubleshooting

Common issues and their solutions:

| Symptom | Cause | Fix |
|---------|--------|-----|
| `nvidia-smi` not found | Missing NVIDIA drivers | Install NVIDIA drivers for ARM64 |
| Container fails to access GPU | Missing NVIDIA Container Toolkit | Install nvidia-container-toolkit |
| JAX only uses CPU | CUDA/JAX version mismatch | Reinstall JAX with CUDA support |
| Port 8080 unavailable | Port already in use | Use `-p 8081:8080` or kill process on 8080 |
| Package conflicts in Docker build | Outdated environment file | Update environment file for Blackwell |

## Step 12. Cleanup and rollback

Remove containers and reset environment if needed.

> **Warning:** This will remove all container data and downloaded images.

```bash
## Stop and remove containers
docker stop $(docker ps -q)
docker system prune -f

## Reset pipenv environment
pipenv --rm
```

To rollback: Re-run installation steps from Step 2.

## Step 13. Next steps

Apply JAX optimization techniques to your own NumPy-based machine learning code.

```bash
## Example: Profile your existing NumPy code
python -m cProfile your_numpy_script.py

## Then adapt to JAX and compare performance
```

Try adapting your favorite NumPy algorithms to JAX and measure performance improvements on 
Blackwell GPU architecture.